Publications
 
Sonja Kosuta, Saul Hazledine, Jongho Sun, Hiroki Miwa, Richard J. Morris, J. Allan Downie and Giles E. D. Oldroyd (2008) Differential and chaotic calcium signatures in the
symbiosis signaling pathway of legumes. PNAS. 105, 9823-9828.

Nicolas Tsesmetzis, Matthew Couchman,Janet Higgins, Alison Smith, John H. Doonan, Georg J. Seifert, Esther E. Schmidt, Imre Vastrik, Ewan Birney, Guanming Wu, Peter D’Eustachio, Lincoln D. Stein, Richard J. Morris, Michael W. Bevan, and Sean V.Walsh (2008) Arabidopsis Reactome: A Foundation Knowledgebase for Plant Systems Biology. Plant Cell. 20, 1426-1436.

Scott Grandison and Richard J. Morris (2008) Biochemical Rate Constants are Scale-invariant. Bioinformatics 24(6), 741-743.

Lora Mak, Scott Grandison, Richard J. Morris (2008) An extension of spherical harmonics to region-based rotationally-invariant descriptors for molecular shape description and comparison. J. Mol. Graphics and Modeling 26, 1035-1045.

Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton (2007) Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. BMC Bioinformatics 8, (Suppl 8).

Scott Grandison, Richard Legget, and Richard J. Morris (2007) Measuring the elastomechanical properties of filamentous organisms with the calculus of variations. Systems Biology and Statistical Bioinformatics, Edited by S. Barber, PD Baxter and KV Mardia. Leeds. ISBN 978 0 85316 263 6.

Chris Bridson and Richard J. Morris (2007) Protein function prediction: Entropy driven integration of structural information. Systems Biology and Statistical Bioinformatics, Edited by S. Barber, PD Baxter and KV Mardia. Leeds. ISBN 978 0 85316 263 6.

Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton (2007) Shape Variance in Protein Binding Pockets and their Ligands. J Mol Biol, 20 368:283-301 

Chris Bridson and Richard J. Morris (2007). A Bayesian framework for integrating genomic data to aid function prediction. BMC Systems Biology, 1(Suppl 1):P62

Lora Mak and Richard J. Morris (2007) 3D Zernike moments for molecular shape description and comparison. In: 1st International Conference on Bioinformatics Research and Development (BIRD07); Berlin, Germany; Austrian Computer Society; 33-41.
Editors: S. Hochreiter, J. Kueng, J. Palkoska, R. Wagner

Rafael J. Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Cheryl Arrowsmith, Aled Edwards and Janet M. Thornton (2007) Analysis of binding site similarity, small molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinformatics, 23(2) 104-109

Richard J. Morris, Anastassis Perrakis, Victor S. Lamzin (2007) Model Building and Refinement in Macromolecular Crystallography - Conventional and High-throughput, Eds. Mark Sanderson and Jane Skelly, Oxford University Press (in press)
Albeck, S.,...Richard J. Morris... et al. (2006) SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Cryst. D62, 1184-1195

Richard J. Morris (2006) An evaluation of spherical designs for molecular-like surfaces. J. Mol. Graphics and Modeling. 24, 5, 356-361
Fabian Glaser, Richard J. Morris, Rafael Najmanovich, Roman Laskowski, Janet M. Thornton (2006) A Method for Localizing Ligand Binding Pockets in Protein Structures. Proteins: Structure, Function, Bioinformatics. 62 (2) 479-488.

Richard J. Morris, Abdullah Kahraman, Janet M. Thornton (2005) Binding pocket shape analysis for protein function prediction. Acta Cryst. D61, C156-C157. 

Richard J. Morris, Abdullah Kahraman, Thomas Funkhouser, Rafael Najmanovich, Gareth Stockwell, Fabian Glaser, Roman Laskowski, Janet M. Thornton (2005) Binding pocket shape analysis for protein function prediction. Quantitative Biology, Shape Analysis, and Wavelets, 91-94, Edited by S. Barber, P. D. Baxter, K. V. Mardia, R. E. Wells. Leeds. ISBN 0 85316 243 3.

Thomas Funkhouser, Fabian Glaser, Roman Laskowski, Richard J. Morris, Rafael Najmanovich, Gareth Stockwell, Janet M. Thornton (2005) Shape-based classification of bound ligands. Quantitative Biology, Shape Analysis, and Wavelets, 39-42, Edited by S. Barber, P. D. Baxter, K. V. Mardia, R. E. Wells. Leeds. ISBN 0 85316 243 3.

Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton (2005). Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics. 15 21(10):2347-55.

Serge X. Cohen, Richard J. Morris, Francisco J. Fernandez, Marouane Ben Jeloul, Mattheos Kakaris, Venkataraman Parthasarthy, Victor S. Lamzin, Gerard J. Kleywegt, Anastassis Perrakis (2004) Towards complete validated models in the next generation ARP/wARP. Acta Cryst. D60, 2222-2229.

Richard J. Morris, Eric Blanc, Gerard Bricogne (2004). On the interpretation and use of <|E|^2> profiles. Acta Cryst. D60, 227-240.
Richard J. Morris, Petrus H. Zwart, Serge Cohen, Francisco J. Fernandez, Mattheos Kakaris, Olga Kirillova, Clemens Vonrhein, Anastassis Perrakis, Victor S. Lamzin (2004). Breaking good resolutions with ARP/wARP. J. Synchr. Rad. 11, 56-59 

Richard J. Morris (2004). Statistical Pattern Recognition for Macromolecular Crystallographers. Acta Cryst. D60, 2133-2143.

Richard J. Morris, Anastassis Perrakis, Victor S. Lamzin (2003) ARP/wARP and the Automatic Interpretation of Protein Electron Density Maps. Methods in Enzymology. Macromolecular Crystallography Part D. Academic Press. Editors C. Carter and R. Sweet. Vol. 374, 429-244.

Richard J. Morris and Gerard Bricogne (2003) Sheldrick's 1.2 A Rule and Beyond. Acta Cryst. D59, 2003, 615-617. 
Pietro Roversi, Eric Blanc, Richard J. Morris, Claus Flensburg, Gerard Bricogne (2002). Maximum likelihood density modification under maximum entropy control. Acta Cryst. D58, 2002, C251

Gerard Bricogne, Clemens Vonrhein, Wlodek Paciorek, Claus Flensburg, Marc Schiltz, Eric Blanc, Pietro Roversi, Richard J. Morris, Gwyndaf Evans (2002).  Enhancements in Autosharp and Sharp, with applications to difficult phasing problems. Acta Cryst. D58, 2002, C239.

Richard J. Morris, Anastassis Perrakis, Victor S. Lamzin (2002). ARP/wARP's Model Building Algorithms. I. The Main Chain. Acta Cryst. D58, 2002, 968-975 

Andrea Schmidt, Ana Gonzales, Richard J. Morris, M. Costabel, Pedro Alzari, Victor S. Lamzin (2002). Advantages of high-resolution phasing: MAD to atomic resolution. Acta Cryst. D58. 1433-1441 

Rob Meijers, Richard J. Morris, Hans. W. Adolph, Angelo Merli, Victor S. Lamzin, Eila S. Cedergren-Zeppezauer (2001). On the Enzymatic Activation of NADH. Journal of Biological Chemistry, 2001, Vol.276, 9316-9321
Anastassis Perrakis, Richard J. Morris  and Victor S. Lamzin (1999). Automated protein model building combined with iterative structure refinement. Nature Structural Biology, Vol.6,5, 458-463.
Victor S. Lamzin, Richard J. Morris, Zbigniew Dauter, Keith S. Wilson, and Martha M. Teeter (1999). Experimental Observation of Bonding Electrons in Proteins. Journal of Biological Chemistry, Vol.274, 20753-20755
 
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