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JIC Publications
JIC papers published in high impact general science journals
Cell, Nature, Science, PNAS, PLoS Biology, Current Biology & Genes and Development (2006 to present)
JIC scientists regularly publish in the high impact general science journals Cell, Nature, Science, PNAS, PLoS Biology, Current Biology & Genes and Development. These achievements arise from the unique research environment in the Institute that fosters teamwork, multidisciplinary problem solving, and clear focus on jointly held long-term goals in achieving food security and healthy living.
2012-
Kumar S. V., Lucyshyn D., Jaeger K. E., Alós E., Alvey E., Harberd N. P., Wigge P. A. (2012)
Transcription factor PIF4 controls the thermosensory activation of flowering. Nature ,
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Xie F., Murray J. D., Kim J., Heckmann A. B., Edwards A., Oldroyd G. E., Downie J. A. (2012)
Legume pectate lyase required for root infection by rhizobia. Proceedings of the National Academy of Sciences USA 109, 633-638
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Kuchen E. E., Fox S., de Reuille P. B., Kennaway R., Bensmihen S., Avondo J., Calder G. M., Southam P., Robinson S., Bangham A., Coen E. (2012)
Generation of leaf shape through early patterns of growth and tissue polarity. Science 335, 1092-6
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Liu F., Bakht S., Dean C. (2012)
Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination Science 335, 1621-1623
2011-
Arnaud N., Lawrenson T., Ostergaard L., Sablowski R. (2011)
The same regulatory point mutation changed seed-dispersal structures in evolution and domestication. Current Biology 21, 1215-9
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Angel A., Song J., Dean C., Howard M. (2011)
A polycomb-based switch underlying quantitative epigenetic memory Nature 476, 105-108
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Young N. D., Debellé F., Oldroyd G. E., Geurts R., Cannon S. B., Udvardi M. K., Benedito V. A., Mayer K. F., Gouzy J., Schoof H., Van de Peer Y., Proost S., Cook D. R., Meyers B. C., Spannagl M., Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A. K., Murray J. D., Naoumkina M. A., Rosen B., Silverstein K. A., Tang H., Rombauts S., Zhao P. X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Bergčs H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., Deshpande S., Dai X., Doyle J. J., Dudez A. M., Farmer A. D., Fouteau S., Rogers J., Town C. D., Roe B. A. (2011)
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524
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Capoen W., Sun J., Wysham D., Otegui M. S., Venkateshwaran M., Hirsch S., Miwa H., Downie J. A., Morris R. J., Ané J. M., Oldroyd G. E. (2011)
Nuclear membranes control symbiotic calcium signaling of legumes Proceedings of the National Academy of Sciences USA 108, 14348-14353
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Franklin K. A., Lee S. H., Patel D., Kumar S. V., Spartz A. K., Gu C., Ye S., Yu P., Breen G., Cohen J. D., Wigge P. A., Gray W. M. (2011)
Phytochrome-interacting factor 4 (PIF4) regulates auxin biosynthesis at high temperature. Proceedings of the National Academy of Sciences USA 108, 20231-5
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Murakami T., Burian J., Yanai K., Bibb M. J., Thompson C. J. (2011)
A system for the targeted amplification of bacterial gene clusters multiplies antibiotic yield in Streptomyces coelicolor. Proceedings of the National Academy of Sciences USA 108, 16020-16025
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Rajendran C., Gerhardt E. C. M., Bjelic S., Gasperina A., Scarduelli M., Pedrosa F. O., Chubatsu L. S., Merrick M., Souza E. M., Winkler F. K., Huergo L. F., Li X. D. (2011)
Crystal structure of the GlnZ-DraG complex reveals a different form of PII-target interaction. Proceedings of the National Academy of Sciences USA 108, E1254-1263
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Sonmez C., Bäurle I., Magusin A., Dreos R., Laubinger S., Weigel D., Dean C. (2011)
RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences USA 108, 8508-13
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Fan J., Crooks C., Creissen G., Hill L., Fairhurst S., Doerner P., Lamb C. (2011)
Pseudomonas sax genes overcome aliphatic isothiocyanate-mediated non-host resistance in Arabidopsis Science 331, 1185-1188
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Robinson S., de Reuille P., Chan J., Bergmann D., Prusinkiewicz P., Coen E. S. (2011)
Generation of spatial patterns through cell polarity switching Science 333, 1436-1440
2010-
Gerdes K., Howard M., Szardenings F. (2010)
Pushing and pulling in prokaryotic DNA segregation Cell 141, 927-942
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Kumar S. V., Wigge P. A. (2010)
H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis Cell 140, 136-47
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Eriksson S., Stransfeld L., Adamski N. M., Breuninger H., Lenhard M. (2010)
KLUH/CYP78A5-dependent growth signaling coordinates floral organ growth in Arabidopsis Current Biology 20, 527-532
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Pesquet E., Korolev A. V., Calder G., Lloyd C. W. (2010)
The microtubule-associated protein AtMAP70-5 regulates secondary wall patterning in Arabidopsis wood cells Current Biology 20, 744-749
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Atwell S., Huang Y. S., Vilhjálmsson B. J., Willems G., Horton M., Li Y., Meng D., Platt A., Tarone A. M., Hu T. T., Jiang R., Muliyati N. W., Zhang X., Amer M. A., Baxter I., Brachi B., Chory J., Dean C., Debieu M., de Meaux J., Ecker J. R., Faure N., Kniskern J. M., Jones J. D., Michael T., Nemri A., Roux F., Salt D. E., Tang C., Todesco M., Traw M. B., Weigel D., Marjoram P., Borevitz J. O., Bergelson J., Nordborg M. (2010)
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465, 627-31
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Wright J. M., Febrer M., McKenzie N., Byrne M. E., Walsh S., Higgins J., Bevan M. W. (2010)
Genome sequencing and analysis of the model grass Brachypodium distachyon Nature 463, 763-768
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Cui M. L., Copsey L., Green A., Bangham A., Coen E. (2010)
Quantitative control of organ shape by combinatorial gene activity PLOS Biology 8, e1000538
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Goto Y., Li B., Claesen J., Shi Y., Bibb M., van der Donk W. A. (2010)
Discovery of unique lanthionine synthetases reveals new mechanistic and evolutionary insights PLOS Biology 8, e1000339
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Rosas U., Barton N. H., Copsey L., Barbier de Reuille P., Coen E. (2010)
Cryptic variation between species and the basis of hybrid performance PLOS Biology 8, e1000429
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Claesen J., Bibb M. (2010)
Genome mining and genetic analysis of cypemycin biosynthesis reveal an unusual class of posttranslationally modified peptides. Proceedings of the National Academy of Sciences USA 107, 16297-16302
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Foulston L. C., Bibb M. J. (2010)
Microbisporicin gene cluster reveals unusual features of lantibiotic biosynthesis in actinomycetes Proceedings of the National Academy of Sciences USA 107, 13461-13466
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Graf A., Schlereth A., Stitt M., Smith A. M. (2010)
Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proceedings of the National Academy of Sciences USA 107, 9458-63
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Lefebvre B., Timmers T., Mbengue M., Moreau S., Hervé C., Tóth K., Bittencourt-Silvestre J., Klaus D., Deslandes L., Godiard L., Murray J. D., Udvardi M. K., Raffaele S., Mongrand S., Cullimore J., Gamas P., Niebel A., Ott T. (2010)
A remorin protein interacts with symbiotic receptors and regulates bacterial infection. Proceedings of the National Academy of Sciences USA 107, 2343-8
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Gleick P. H., Amasino R. M., Berenbaum M. R., Cazenave A., Dean C. (2010)
Climate change and the integrity of science Science 328, 689-90
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Liu F., Marquardt S., Lister C., Swiezewski S., Dean C. (2010)
Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing Science 327, 94-97
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Spanu P. D., Abbott J. C., Amselem J., Burgis T. A., Soanes D. M., Stüber K., Ver Loren van Themaat E., Brown J. K. M., Butcher S. A., Gurr S. J., Lebrun M. H., Ridout C. J., Schulze-Lefert P., Talbot N. J., Ahmadinejad N., Ametz C., Barton G. R., Benjdia M., Bidzinski P., Bindschedler L. V., Both M., Brewer M. T., Cadle-Davidson L., Cadle-Davidson M. M., Collemare J., Cramer R., Frenkel O., Godfrey D., Harriman J., Hoede C., King B. C., Klages S., Kleemann J., Knoll D., Koti P. S., Kreplak J., López-Ruiz F. J., Lu X., Maekawa T., Mahanil S., Micali C., Milgroom M. G., Montana G., Noir S., O'Connell R. J., Oberhaensli S., Parlange F., Pedersen C., Vigouroux M., Panstruga R. (2010)
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330, 1543-6
2009-
Howard M. (2009)
Cell division: experiments and modelling unite to resolve the middle Current Biology 19, R67-R69
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Sorefan K., Girin T., Liljegren S. J., Ljung K., Robles P., Galván-Ampudia C. S., Offringa R., Friml J., Yanofsky M. F., Řstergaard L. (2009)
A regulated auxin minimum is required for seed dispersal in Arabidopsis Nature 459, 583-6
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Swiezewski S., Liu F., Magusin A., Dean C. (2009)
Cold-induced silencing by long antisense transcripts of an Arabidopsis polycomb target. Nature 462, 799-802
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Barratt D. H., Derbyshire P., Findlay K., Pike M., Wellner N., Lunn J., Feil R., Simpson C., Maule A. J., Smith A. M. (2009)
Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase. Proceedings of the National Academy of Sciences USA 106, 13124-13129
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Benitez-Alfonso Y., Cilia M., San Roman A., Thomas C., Maule A., Hearn S., Jackson D. (2009)
Control of Arabidopsis meristem development by thioredoxin-dependent regulation of intercellular transport. Proceedings of the National Academy of Sciences USA 106, 3615-20
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Harries P. A., Park J. W., Sasaki N., Ballard K. D., Maule A. J., Nelson R. S. (2009)
Differing requirements for actin and myosin by plant viruses for sustained intercellular movement Proceedings of the National Academy of Sciences USA 106, 17594-17599
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Manzano D., Marquardt S., Jones A. M., Baurle I., Liu F., Dean C. (2009)
Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing Proceedings of the National Academy of Sciences USA 106, 8772-7
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Prell J., White J. P., Bourdes A., Bunnewell S., Bongaerts R. J., Poole P. S. (2009)
Legumes regulate Rhizobium bacteroid development and persistence by the supply of branched-chain amino acids. Proceedings of the National Academy of Sciences USA 106, 12477-12482
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Ringgaard S., van Zon J., Howard M., Gerdes K. (2009)
Movement and equipositioning of plasmids by ParA filament disassembly Proceedings of the National Academy of Sciences USA 106, 19369-19374
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Sablowski R. (2009)
Cytokinin and WUSCHEL tie the knot around plant stem cells Proceedings of the National Academy of Sciences USA 106, 16016-16017
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Sato K., Li C., Salard I., Thompson A. J., Banfield M. J., Dennison C. (2009)
Metal-binding loop length and not sequence dictates structure. Proceedings of the National Academy of Sciences USA 106, 5616-5621
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Bednarek P., Osbourn A. (2009)
Plant-microbe interactions: chemical diversity in plant defense. Science 324, 746-8
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Daolin F., Uauy C., Distelfeld A., Blechl A., Epstein L., Chen X., Sela H., Fahima T., Dubcovsky J. (2009)
A kinase-START gene confers temperature-dependent resistance to wheat stripe rust Science 323, 1357-1360
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Edwards M. J., Flatman R. H., Mitchenall L. A., Stevenson C. E., Le T. B., Clarke T. A., McKay A. R., Fiedler H. P., Buttner M. J., Lawson D. M., Maxwell A. (2009)
A crystal structure of the bifunctional antibiotic simocyclinone D8, bound to DNA gyrase Science 326, 1415-8
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Oldroyd G. E., Harrison M. J., Paszkowski U. (2009)
Reprogramming plant cells for endosymbiosis. Science 324, 753-4
2008-
Tottey S., Waldron K. J., Firbank S. J., Reale B., Bessant C., Sato K., Cheek T. R., Gray J., Banfield M. J., Dennison C., Robinson N. J. (2008)
Protein-folding location can regulate manganese-binding versus copper- or zinc-binding. Nature 455, 1138-42
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Osbourn A. (2008)
SAW: breaking down barriers between art and science. PLoS Biology 6, article e211
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Thomas C. L., Bayer E. M., Ritzenthaler C., Fernandez-Calvino L., Maule A. J. (2008)
Specific targeting of a plasmodesmal protein affecting cell-to-cell communication PLoS Biology 6, 180-190
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Capoen W., Oldroyd G. (2008)
How CYCLOPS keeps an eye on plant symbiosis. Proceedings of the National Academy of Sciences USA 105, 20053-4
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Colas I., Shaw P., Prieto P., Wanous M., Spielmeyer W., Mago R., Moore G. (2008)
Effective chromosome pairing requires chromatin remodeling at the onset of meiosis Proceedings of the National Academy of Sciences USA 105, 6075-6080
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Corre C., Song L., O'Rourke S., Chater K. F., Challis G. L. (2008)
2-Alkyl-4-hydroxymethylfuran-3-carboxylic acids, antibiotic production inducers discovered by Streptomyces coelicolor genome mining. Proceedings of the National Academy of Sciences USA 105, 17510-17515
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De Lucia F., Crevillen P., Jones A. M. E., Greb T., Dean C. (2008)
A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization Proceedings of the National Academy of Sciences USA 105, 16831-16836
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Javelle A., Lupo D., Ripoche P., Fulford T., Merrick M., Winkler F. K. (2008)
Substrate binding, deprotonation, and selectivity at the periplasmic entrance of the Escherichia coli ammonia channel AmtB. Proceedings of the National Academy of Sciences USA 105, 5040-5045
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Kosuta S., Hazledine S., Sun J., Miwa H., Morris R. J., Downie J. A., Oldroyd G. E. (2008)
Differential and chaotic calcium signatures in the symbiosis signaling pathway of legumes. Proceedings of the National Academy of Sciences USA 105, 9823-8
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McArthur M., Bibb M. J. (2008)
Manipulating and understanding antibiotic production in Streptomyces coelicolor A3(2) with decoy oligonucleotides. Proceedings of the National Academy of Sciences USA 105, 1020-1025
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Wang Z., Luo Y., Li X., Wang L., Xu S., Yang J., Weng L., Sato S., Tabata S., Ambrose M., Rameau C., Feng X., Hu X., Luo D. (2008)
Genetic control of floral zygomorphy in pea (Pisum sativum L.). Proceedings of the National Academy of Sciences USA 105, 10414-9
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Wu C., You C., Li C., Long T., Chen G., Byrne M. E., Zhang Q. (2008)
RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proceedings of the National Academy of Sciences USA 105, 12915-20
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Yano K., Yoshida S., Müller J., Singh S., Banba M., Vickers K., Markmann K., White C., Schuller B., Sato S., Asamizu E., Tabata S., Murooka Y., Perry J., Wang T. L., Kawaguchi M., Imaizumi-Anraku H., Hayashi M., Parniske M. (2008)
CYCLOPS, a mediator of symbiotic intracellular accommodation. Proceedings of the National Academy of Sciences USA 105, 20540-20545
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Field B., Osbourn A. E. (2008)
Metabolic diversification - independent assembly of operon-like gene clusters in plants Science 320, 543-547
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Kim M., Cui M. L., Cubas P., Gillies A., Lee K., Chapman M. A., Abbott R. J., Coen E. (2008)
Regulatory genes control a key morphological and ecological trait transferred between species Science 322, 1116-1119
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Takeda S., Gapper C., Kaya H., Dolan L. (2008)
Local positive feedback regulation determines cell shape in root hair cells Science 319, 1241-1244
2007-
Greb T., Mylne J. S., Crevillen P., Geraldo N., An H., Gendall A. R. , Dean C. (2007)
The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC Current Biology 17, 73-78
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Jaeger K. E., Wigge P. A. (2007)
FT protein acts as a long-range signal in Arabidopsis Current Biology 17, 1050-1054
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Lloyd C., Buschmann H. (2007)
Plant division: remembering where to build the wall Current Biology 17, R1053-1055
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Conroy M. J., Durand A., Lupo D., Li X. D., Bullough P. A., Winkler F. K., Merrick M. (2007)
The crystal structure of the Escherichia coli AmtB-GlnK complex reveals how GlnK regulates the ammonia channel Proceedings of the National Academy of Sciences USA 104, 1213-1218
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Kalde M., Nühse T. S., Findlay K., Peck S. C. (2007)
The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1. Proceedings of the National Academy of Sciences USA 104, 11850-5
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Lupo D., Li X-D., Durand A., Tomizaki T., Cherif-Zahar B., Matassi G., Merrick M., Winkler F. (2007)
The 1.3-angstrom resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins Proceedings of the National Academy of Sciences USA 104, 19303-19308
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Maillard J., Spronk C. A. E. M., Buchanan G. , Lyall V., Richardson D. J., Palmer T., Vuister G.W. , Sargent F. (2007)
Structural diversity in twin-arginine signal peptide-binding proteins Proceedings of the National Academy of Sciences USA 104, 15641-15646
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Swiezewski S., Crevillen P., Liu F., Ecker F., Jerzmanowski A., Dean C. (2007)
Small RNA-mediated chromatin silencing directed to the 3' region of the developmental regulator, FLC Proceedings of the National Academy of Sciences USA 104, 3633-3538
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Baurle I., Smith L., Baulcombe D. C., Dean C. (2007)
Widespread role for the flowering time regulators FCA and FPA in RNA-mediated chromatin silencing Science 318, 109-112
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Dolan L. (2007)
Scarecrows at the border Science 316, 377-378
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Downie J. A. (2007)
Infectious heresy Science 316, 1296-1297
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Menand B., Keke Y., Jouannic S., Hoffmann L., Ryan E., Linstead P., Schaefer D. G. , Dolan L. (2007)
An ancient mechanism controls the development of cells with a rooting function in land plants Science 316, 1477-1480
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Murray J. D., Karas B. J., Sato S., Tabata S., Amyot L., Szczyglowski K. (2007)
A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis. Science 315, 101-4
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Oldroyd G. (2007)
Nodules and hormones Science 315, 52-53
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Ortega-Martinez O., Pernas-Ochoa M., Carol R., Dolan L. (2007)
Ethylene modulates stem cells division in the Arabidopsis thaliana root Science 317, 505-510
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Prusinkiewicz P., Erasmus Y., Lane B., Harder L., Coen E. (2007)
Evolution and development of inflorescence architectures Science 316, 1452-1456
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Whibley A., Langlade N., Andalo C., Hanna A. I., Bangham A., Thebaud C., Coen E. (2007)
Response to comment on "Evolutionary paths underlying flower color variation in Antirrhinum" Science 315, 461b
2006-
Baurle I., Dean C. (2006)
The timing of developmental transitions in plants Cell 125, 655-664
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Buschmann H., Chan J., Sanchez-Pulido L., Andrae-Navarro M. A., Doonan J. H., Lloyd C. W. (2006)
Microtubule-associated AIR9 recognizes the cortical division site at preprophase and cell-plate insertion Current Biology 16, 1938-1943
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Garcia D., Collier S. A., Byrne M. E., Martienssen R. A. (2006)
Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway Current Biology 16, 933-938
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Costa S., Shaw P. (2006)
Chromatin organization and cell fate switch respond to positional information in Arabidopsis Nature 439, 493-496
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Gleason C., Chaudhuri S., Yang T., Munoz A., Poovaiah B., Oldroyd G. (2006)
Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition Nature 441, 1149-1152
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Griffiths S., Sharp R., Foote T. N., Bertin I., Wanous M., Reader S., Colas I., Moore G. (2006)
Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid locus in polyploid wheat Nature 439, 749-752
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Tirichine L., Imaizumi-Anraku H., Yoshida S., Murakami Y., Madsen L. H., Miwa H., Nakagawa T., Sandal N., Albrektsen A.S., Kawaguchi M., Downie A., Sato S., Kouchi H., Parniske M., Kawasaki S., Stougaard J. (2006)
Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development Nature 441, 1153-1156
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Toomajian C., Hu T. T., Aranzana M. J., Lister C., Tang C., Zheng H., Calabrese P., Dean C., Nordborg M. (2006)
A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome PLoS Biology 4, e137
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Cannon S. B, Sterck L., Rombauts S., Sato S., Cheung F., Gouzy J., Wang X., Mudge J., Oldroyd G. , Young N. D. (2006)
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes Proceedings of the National Academy of Sciences USA 103, 14959-14964
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Kanamori N., Madsen L. H., Radutoiu S., Frantescu M., Quistgaard E. M. H., Miwa H., Downie J. A., James E. K., Felle H. H., Haaning L. L., Jensen T. H., Sato S., Nakamura Y., Tabata S., Sandal N., Stougaard J. (2006)
A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis Proceedings of the National Academy of Sciences USA 103, 359-364
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Mylne J. S., Barrett L., Tessadori F., Mesnage S., Johnson L., Bernatavichute Y. V. , Jacobsen S. E. , Fransz P., Dean C. (2006)
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1 is required for the epigenetic silencing of FLC Proceedings of the National Academy of Sciences USA 103, 5012-5017
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Qi X., Bakht S., Qin B., Leggett M., Hemmings A., Mellon F., Eagles J., Werck-Reichhart D., Schaller H., Lesot A., Melton R., Osbourn A. (2006)
A different function for a member of an ancient and highly conserved cytochrome P450 family: from essential sterols to plant defence Proceedings of the National Academy of Sciences USA 103, 18848-18853
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Widdick D. A., Dilks K., Chandra G., Bottrill A., Naldrett M., Pohlschroder M., Palmer T. (2006)
The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor Proceedings of the National Academy of Sciences USA 103, 17927-17932
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Yanai K., Murakami T., Bibb M. J. (2006)
Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus Proceedings of the National Academy of Sciences USA 103 , 9661-9666
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Ize B., Palmer T. (2006)
Mycobacteria's export strategy Science 313, 1583-1584
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Uauy C., Distelfeld A., Fahima T., Blechl A., Dubcovsky J. (2006)
A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science 314, 1298-301
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Whibley A., Langlade N., Andalo C., Hanna A. I., Bangham A., Thebaud C., Coen E. (2006)
Evolutionary paths underlying flower color variation in Antirrhinum Science 313, 963-966
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